biopsykit.utils package

Module containing various utility functions (time, dataframe, array, file handling, …).

Submodules

• biopsykit.utils.array_handling module
  • sanitize_input_1d()
  • sanitize_input_nd()
  • sanitize_input_series()
  • sanitize_input_dataframe_1d()
  • find_extrema_in_radius()
  • remove_outlier_and_interpolate()
  • sliding_window()
  • sanitize_sliding_window_input()
  • sliding_window_view()
  • downsample()
  • bool_array_to_start_end_array()
  • split_array_equally()
  • accumulate_array()
  • add_datetime_index()
• biopsykit.utils.data_processing module
  • split_data()
  • exclude_subjects()
  • normalize_to_phase()
  • resample_sec()
  • resample_dict_sec()
  • select_dict_phases()
  • rearrange_subject_data_dict()
  • cut_phases_to_shortest()
  • merge_study_data_dict()
  • split_dict_into_subphases()
  • get_subphase_durations()
  • add_subject_conditions()
  • split_subject_conditions()
  • mean_per_subject_dict()
  • mean_se_per_phase()
• biopsykit.utils.dataframe_handling module
  • add_space_to_camel()
  • apply_codebook()
  • camel_to_snake()
  • convert_nan()
  • int_from_str_col()
  • int_from_str_idx()
  • multi_xs()
  • replace_missing_data()
  • snake_to_camel()
  • stack_groups_percent()
  • wide_to_long()
• biopsykit.utils.dtypes module
  • Acc1dDataFrame
  • Acc3dDataFrame
  • BPointDataFrame
  • BiomarkerRawDataFrame
  • CPointDataFrame
  • CodebookDataFrame
  • EcgRawDataFrame
  • EcgResultDataFrame
  • Gyr1dDataFrame
  • Gyr3dDataFrame
  • HeartRateDataFrame
  • HeartRatePhaseDict
  • HeartRateStudyDataDict
  • HeartRateSubjectDataDict
  • HeartbeatSegmentationDataFrame
  • IcgRawDataFrame
  • ImuDataFrame
  • MeanSeDataFrame
  • MergedStudyDataDict
  • PepResultDataFrame
  • PhaseDict
  • QPeakDataFrame
  • RPeakDataFrame
  • SalivaFeatureDataFrame
  • SalivaMeanSeDataFrame
  • SalivaRawDataFrame
  • SleepEndpointDataFrame
  • SleepEndpointDict
  • SleepWakeDataFrame
  • StudyDataDict
  • SubjectConditionDataFrame
  • SubjectConditionDict
  • SubjectDataDict
  • is_acc1d_dataframe()
  • is_acc3d_dataframe()
  • is_b_point_dataframe()
  • is_biomarker_raw_dataframe()
  • is_c_point_dataframe()
  • is_codebook_dataframe()
  • is_ecg_raw_dataframe()
  • is_ecg_result_dataframe()
  • is_gyr1d_dataframe()
  • is_gyr3d_dataframe()
  • is_heart_rate_dataframe()
  • is_heartbeat_segmentation_dataframe()
  • is_hr_phase_dict()
  • is_hr_subject_data_dict()
  • is_icg_raw_dataframe()
  • is_imu_dataframe()
  • is_mean_se_dataframe()
  • is_merged_study_data_dict()
  • is_pep_result_dataframe()
  • is_phase_dict()
  • is_q_peak_dataframe()
  • is_r_peak_dataframe()
  • is_saliva_feature_dataframe()
  • is_saliva_mean_se_dataframe()
  • is_saliva_raw_dataframe()
  • is_sleep_endpoint_dataframe()
  • is_sleep_endpoint_dict()
  • is_sleep_wake_dataframe()
  • is_study_data_dict()
  • is_subject_condition_dataframe()
  • is_subject_condition_dict()
  • is_subject_data_dict()
• biopsykit.utils.exceptions module
  • DataFrameTransformationError
  • EcgProcessingError
  • EventExtractionError
  • FeatureComputationError
  • FileExtensionError
  • ValidationError
  • ValueRangeError
• biopsykit.utils.file_handling module
  • mkdirs()
  • get_subject_dirs()
  • export_figure()
  • is_excel_file()
• biopsykit.utils.functions module
  • se()
  • mean_se()
• biopsykit.utils.legacy_helper module
  • legacy_convert_hr_phase_dict()
• biopsykit.utils.time module
  • check_tz_aware()
  • extract_time_from_filename()
  • get_time_from_date()
  • time_to_timedelta()
  • timedelta_to_time()

biopsykit.stats.stats module biopsykit.utils.array_handling module