biopsykit.signals package

Module for processing different types of biosignals.

Subpackages

• biopsykit.signals.ecg package
  • EcgProcessingPipeline
    • EcgProcessingPipeline.ecg_raw_
    • EcgProcessingPipeline.ecg_clean_
    • EcgProcessingPipeline.rpeaks_raw_
    • EcgProcessingPipeline.rpeaks_
    • EcgProcessingPipeline.hrv_extracted_
    • EcgProcessingPipeline.preprocessing_algo
    • EcgProcessingPipeline.r_peak_algo
    • EcgProcessingPipeline.outlier_detection_algos
    • EcgProcessingPipeline.outlier_correction_algo
    • EcgProcessingPipeline.hrv_r_peak_correction_algo
    • EcgProcessingPipeline.hrv_extraction_algo
    • EcgProcessingPipeline.handle_missing_events
    • EcgProcessingPipeline.get_default_biopsykit_pipeline()
    • EcgProcessingPipeline.run()
  • EcgProcessor
    • EcgProcessor.ecg_result
    • EcgProcessor.heart_rate
    • EcgProcessor.rpeaks
    • EcgProcessor.ecg
    • EcgProcessor.hr_result
    • EcgProcessor.ecg_process()
    • EcgProcessor.outlier_corrections()
    • EcgProcessor.outlier_params_default()
    • EcgProcessor.correct_outlier()
    • EcgProcessor.correct_rpeaks()
    • EcgProcessor.hrv_process()
    • EcgProcessor.hrv_batch_process()
    • EcgProcessor.ecg_estimate_rsp()
    • EcgProcessor.rsa_process()
  • Subpackages
    • biopsykit.signals.ecg.aggregation package
      • HeartRateAggregation
      • HeartRateResampling
    • biopsykit.signals.ecg.event_extraction package
      • BaseEcgExtraction
      • BaseEcgExtractionWithHeartbeats
      • QPeakExtractionForouzanfar2018
      • QPeakExtractionMartinez2004Neurokit
      • QPeakExtractionSciPyFindPeaksNeurokit
      • QPeakExtractionVanLien2013
      • RPeakExtractionNeurokit
    • biopsykit.signals.ecg.hrv_extraction package
      • HrvExtraction
    • biopsykit.signals.ecg.outlier_correction package
      • BaseRPeakOutlierDetection
      • RPeakOutlierCorrection
      • RPeakOutlierCorrectionHrvLipponen2019
      • RPeakOutlierDetectionBerntson1990
      • RPeakOutlierDetectionCorrelation
      • RPeakOutlierDetectionPhysiological
      • RPeakOutlierDetectionQuality
      • RPeakOutlierDetectionRRDiffIntervalStatistics
      • RPeakOutlierDetectionRRIntervalStatistics
    • biopsykit.signals.ecg.preprocessing package
      • BaseEcgPreprocessing
      • EcgPreprocessingNeurokit
    • biopsykit.signals.ecg.segmentation package
      • BaseHeartbeatSegmentation
      • HeartbeatSegmentationNeurokit
    • biopsykit.signals.ecg.transformation package
      • HeartRateNormalization
  • Submodules
    • biopsykit.signals.ecg.ecg module
      • EcgProcessor
    • biopsykit.signals.ecg.plotting module
      • ecg_plot()
      • hr_distribution_plot()
      • hr_plot()
      • hrv_frequency_plot()
      • hrv_plot()
      • hrv_poincare_plot()
      • individual_beats_plot()
      • rr_distribution_plot()
• biopsykit.signals.eeg package
  • EegProcessor
    • EegProcessor.eeg_result
    • EegProcessor.relative_band_energy()
  • Submodules
    • biopsykit.signals.eeg.eeg module
      • EegProcessor
• biopsykit.signals.icg package
  • Subpackages
    • biopsykit.signals.icg.event_extraction package
      • BPointExtractionArbol2017IsoelectricCrossings
      • BPointExtractionArbol2017SecondDerivative
      • BPointExtractionArbol2017ThirdDerivative
      • BPointExtractionDebski1993SecondDerivative
      • BPointExtractionDrost2022
      • BPointExtractionForouzanfar2018
      • BPointExtractionLozano2007LinearRegression
      • BPointExtractionLozano2007QuadraticRegression
      • BPointExtractionMiljkovic2022
      • BPointExtractionPale2021
      • BPointExtractionSherwood1990
      • BPointExtractionStern1985
      • BaseBPointExtraction
      • BaseCPointExtraction
      • CPointExtractionScipyFindPeaks
    • biopsykit.signals.icg.outlier_correction package
      • BaseBPointOutlierCorrection
      • OutlierCorrectionDummy
      • OutlierCorrectionForouzanfar2018
      • OutlierCorrectionLinearInterpolation
    • biopsykit.signals.icg.preprocessing package
      • IcgPreprocessingBandpass
• biopsykit.signals.imu package
  • convert_acc_data_to_g()
  • sliding_windows_imu()
  • var_norm_windows()
  • Subpackages
    • biopsykit.signals.imu.feature_extraction package
      • Submodules
  • Submodules
    • biopsykit.signals.imu.activity_counts module
      • ActivityCounts
    • biopsykit.signals.imu.imu module
      • convert_acc_data_to_g()
      • sliding_windows_imu()
      • var_norm_windows()
    • biopsykit.signals.imu.rest_periods module
      • RestPeriods
    • biopsykit.signals.imu.static_moment_detection module
      • find_static_moments()
      • find_first_static_window_multi_sensor()
    • biopsykit.signals.imu.wear_detection module
      • WearDetection
• biopsykit.signals.pep package
  • PepExtraction
    • PepExtraction.pep_results_
    • PepExtraction.handle_negative_pep
    • PepExtraction.extract()
• biopsykit.signals.rsp package
  • RspProcessor
    • RspProcessor.rsp_compute_rate()
  • Submodules
    • biopsykit.signals.rsp.rsp module
      • RspProcessor

biopsykit.saliva.utils module biopsykit.signals.ecg package