biopsykit.signals.ecg.plotting module¶
Module providing functions for plotting ECG data.
- biopsykit.signals.ecg.plotting.ecg_plot(ecg_processor=None, key=None, ecg_signal=None, heart_rate=None, sampling_rate=256, plot_ecg_signal=True, plot_distribution=True, plot_individual_beats=True, **kwargs)[source]¶
Plot ECG processing results.
By default, this plot consists of four subplots:
top left: course of ECG signal plot with signal quality indicator, detected R peaks and R peaks marked as outlier
bottom left: course of heart rate (tachogram)
top right: individual heart beats overlaid on top of each other
bottom right: heart rate distribution (histogram)
To use this function, either simply pass an
EcgProcessor
object together with akey
indicating which phase needs to be processed should be processed or the two dataframesecg_signal
andheart_rate
resulting fromecg_process()
.- Parameters
ecg_processor (
EcgProcessor
, optional) –EcgProcessor
object. If this argument is supplied, thekey
argument needs to be supplied as well.key (str, optional) – Dictionary key of the phase to process. Needed when
ecg_processor
is passed as argument.ecg_signal (
EcgResultDataFrame
, optional) – Dataframe with processed ECG signal. Output fromecg_process()
.heart_rate (
DataFrame
, optional) – Dataframe with heart rate output. Output fromecg_process()
.sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Not needed if
ecg_processor
is supplied as parameter. Default: 256plot_ecg_signal (bool, optional) – Whether to plot the cleaned ECG signal in a subplot or not. Default:
True
plot_distribution (bool, optional) – Whether to plot the heart rate distribution in a subplot or not. Default:
True
plot_individual_beats (bool, optional) – Whether to plot the individual heart beats in a subplot or not. Default:
True
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizetitle
: Optional name to add to plot title (after “Electrocardiogram (ECG)”)legend_loc
: Location of legend in plot. Passed as loc parameter tomatplotlib.axes.Axes.legend()
.legend_fontsize
: Fontsize of legend text. Passed as fontsize parameter tomatplotlib.axes.Axes.legend()
.
- Returns
- Return type
Tuple[matplotlib.figure.Figure, Sequence[matplotlib.axes._axes.Axes]]
See also
hr_plot()
plot heart rate only
hr_distribution_plot()
plot heart rate distribution only
individual_beats_plot()
plot individual beats only
hrv_plot()
plot heart rate variability
- biopsykit.signals.ecg.plotting.hr_plot(heart_rate, plot_mean=True, plot_outlier=False, outlier=None, **kwargs)[source]¶
Plot course of heart rate over time (tachogram).
This plot is also used as subplot in
ecg_plot()
.- Parameters
heart_rate (
DataFrame
) – Dataframe with heart rate output. Output fromecg_process()
.plot_mean (bool, optional) – Whether to plot the mean heart rate as horizontal line or not. Default:
True
plot_outlier (bool, optional) – Whether to plot ECG signal outlier as vertical outlier or not. Default:
False
outlier (
ndarray
, optional) – List of outlier indices. Only needed ifplot_outlier
isTrue
. Default:None
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizetitle
: Optional name to add to plot title (after “Electrocardiogram (ECG)”)legend_loc
: Location of legend in plot. Passed as loc parameter tomatplotlib.axes.Axes.legend()
.legend_fontsize
: Fontsize of legend text. Passed as fontsize parameter tomatplotlib.axes.Axes.legend()
.ax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
See also
ecg_plot()
plot ECG overview
- biopsykit.signals.ecg.plotting.hrv_plot(ecg_processor=None, key=None, ecg_signal=None, rpeaks=None, sampling_rate=256, plot_psd=True, **kwargs)[source]¶
Plot Heart Rate Variability results.
By default, it consists of 3 plots:
top left: RR interval distribution (histogram) including boxplot to visualize distribution and median
bottom left: Power Spectral Density (PSD) plot of RR intervals
right: Poincaré plot of RR intervals
To use this function, either simply pass an
EcgProcessor
object together with akey
indicating which phase needs to be processed should be processed or the two dataframesecg_signal
andheart_rate
resulting fromecg_process()
.- Parameters
ecg_processor (
EcgProcessor
, optional) –EcgProcessor
object. If this argument is passed, thekey
argument needs to be supplied as well.key (str, optional) – Dictionary key of the phase to process. Needed when
ecg_processor
is passed as argument.ecg_signal (
DataFrame
, optional) – dataframe with processed ECG signal. Output fromecg_process()
.rpeaks (
RPeakDataFrame
, optional) – Dataframe with detected R peaks. Output fromecg_process()
.sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Not needed if
ecg_processor
is supplied as parameter. Default: 256plot_psd (bool, optional) – Whether to plot power spectral density (PDF) from frequency-based HRV analysis in a subplot or not. Default:
True
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizetitle
: Optional name to add to plot title (after “Electrocardiogram (ECG)”)legend_loc
: Location of legend in plot. Passed as loc parameter tomatplotlib.axes.Axes.legend()
.legend_fontsize
: Fontsize of legend text. Passed as fontsize parameter tomatplotlib.axes.Axes.legend()
.ax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
Tuple[matplotlib.figure.Figure, Sequence[matplotlib.axes._axes.Axes]]
See also
rr_distribution_plot()
plot RR interval distribution
hrv_poincare_plot()
plot HRV using Poincaré plot
hrv_frequency_plot()
plot Power Spectral Density (PSD) of RR intervals
- biopsykit.signals.ecg.plotting.hr_distribution_plot(heart_rate, **kwargs)[source]¶
Plot heart rate distribution (histogram).
This plot is also used as subplot in
ecg_plot()
.- Parameters
heart_rate (
DataFrame
, optional) – dataframe with heart rate output. Output fromecg_process()
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizeax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
See also
ecg_plot()
plot ECG overview
- biopsykit.signals.ecg.plotting.rr_distribution_plot(rpeaks, sampling_rate=256, **kwargs)[source]¶
Plot distribution of RR intervals (histogram) with boxplot and rugplot.
This plot is also used as subplot in
hrv_plot()
.- Parameters
rpeaks (
DataFrame
, optional) – dataframe with R peaks. Output ofecg_process()
.sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Default: 256
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizeax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
See also
hr_distribution_plot()
plot heart rate distribution (without boxplot and rugplot)
- biopsykit.signals.ecg.plotting.hrv_frequency_plot(rpeaks, sampling_rate=256, **kwargs)[source]¶
Plot Power Spectral Density (PSD) of RR intervals.
This plot is also used as subplot in
hrv_plot()
.- Parameters
rpeaks (
RPeakDataFrame
) – Dataframe with detected R peaks. Output fromecg_process()
.sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Default: 256
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizeax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
See also
hrv_plot()
plot heart rate variability
- biopsykit.signals.ecg.plotting.hrv_poincare_plot(rpeaks, sampling_rate=256, **kwargs)[source]¶
Plot Heart Rate Variability as Poincaré Plot.
This plot is also used as subplot in
hrv_plot()
.- Parameters
rpeaks (
RPeakDataFrame
) – Dataframe with detected R peaks. Output fromecg_process()
.sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Default: 256
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizeax
: List of pre-existing axes for the plot. Otherwise, a new figure and list of axes objects are created and returned.
- Returns
- Return type
Tuple[matplotlib.figure.Figure, Sequence[matplotlib.axes._axes.Axes]]
See also
hrv_plot()
plot heart rate variability
- biopsykit.signals.ecg.plotting.individual_beats_plot(ecg_signal, rpeaks=None, sampling_rate=256, **kwargs)[source]¶
Plot all segmented heart beats overlaid on top of each other.
This plot is also used as subplot in
ecg_plot()
.- Parameters
ecg_signal (
EcgResultDataFrame
, optional) – Dataframe with processed ECG signal. Output fromecg_process()
.rpeaks (
RPeakDataFrame
, optional) – Dataframe with detected R peaks orNone
to infer R peaks fromecg_signal
. Default:None
sampling_rate (float, optional) – Sampling rate of recorded data in Hz. Default: 256
**kwargs –
Additional parameters to configure the plot. Parameters include:
figsize
: Figure sizeax
: Pre-existing axes for the plot. Otherwise, a new figure and axes object are created and returned.
- Returns
- Return type
See also
ecg_plot()
plot ECG overview