biopsykit package¶
A Python package for the analysis of biopsychological data.
Subpackages¶
- biopsykit.classification package
- biopsykit.io package
convert_time_log_datetime()convert_time_log_dict()load_atimelogger_file()load_codebook()load_long_format_csv()load_pandas_dict_excel()load_questionnaire_data()load_subject_condition_list()load_time_log()write_pandas_dict_excel()write_result_dict()- Submodules
- biopsykit.io.biomarker module
- biopsykit.io.biopac module
- biopsykit.io.carwatch_logs module
- biopsykit.io.ecg module
- biopsykit.io.eeg module
- biopsykit.io.fibion module
- biopsykit.io.io module
- biopsykit.io.nilspod module
- biopsykit.io.psg module
- biopsykit.io.saliva module
- biopsykit.io.sleep module
- biopsykit.io.sleep_analyzer module
- biopsykit.io.tfm module
- biopsykit.metadata package
- biopsykit.plotting package
- biopsykit.protocols package
CARCFTMISTTSSTBaseProtocolBaseProtocol.nameBaseProtocol.structureBaseProtocol.saliva_typesBaseProtocol.test_timesBaseProtocol.sample_timesBaseProtocol.saliva_dataBaseProtocol.hr_dataBaseProtocol.rpeak_dataBaseProtocol.hr_resultsBaseProtocol.hr_above_baseline_resultsBaseProtocol.hrv_resultsBaseProtocol.hrv_above_baseline_resultsBaseProtocol.hr_ensembleBaseProtocol.saliva_plot_paramsBaseProtocol.hr_mean_plot_paramsBaseProtocol.hr_ensemble_plot_paramsBaseProtocol.to_file()BaseProtocol.from_file()BaseProtocol.add_saliva_data()BaseProtocol.add_hr_data()BaseProtocol.compute_hr_results()BaseProtocol.compute_hrv_results()BaseProtocol.compute_hr_ensemble()BaseProtocol.compute_hr_above_baseline()BaseProtocol.compute_hrv_above_baseline()BaseProtocol.add_hr_results()BaseProtocol.get_hr_results()BaseProtocol.add_hrv_results()BaseProtocol.export_hr_results()BaseProtocol.export_hr_above_baseline_results()BaseProtocol.export_hr_ensemble()BaseProtocol.export_hrv_results()BaseProtocol.export_hrv_above_baseline_results()BaseProtocol.get_hrv_results()BaseProtocol.add_hr_ensemble()BaseProtocol.get_hr_ensemble()BaseProtocol.saliva_plot()BaseProtocol.saliva_plot_combine_legend()BaseProtocol.saliva_feature_boxplot()BaseProtocol.saliva_multi_feature_boxplot()BaseProtocol.hr_ensemble_plot()BaseProtocol.hr_mean_plot()
CftFeatureExtractionCftFeatureExtraction.cft_parameterCftFeatureExtraction.output_CftFeatureExtraction.start_baseline_secCftFeatureExtraction.duration_baseline_secCftFeatureExtraction.duration_cft_secCftFeatureExtraction.duration_recovery_secCftFeatureExtraction.group_levelCftFeatureExtraction.error_handlingCftFeatureExtraction.extract()
- Submodules
- biopsykit.questionnaires package
abi()abi_ms()ads_l()asi()asku()asq()asq_mod()besaa()bfi_10()bfi_k()bidr()brief_cope()cesd()clq()ctq()erq()eval_clinic()fee()fkk()fscrs()ghq()hads()idq_post_scan()idq_pre_scan()ie_4()kab()kkg()lsq()mbi_gs()mbi_gss()mdbf()meq()midi()mkhai()mlq()mves()panas()pasa()peat()pfb()phq()psqi()pss()purpose_life()resilience()rmidi()rse()rsq()sci()scs()sds()sop()ssgs()sss()sssq()stadi()stai_short()state_rumination()svf_42()svf_120()swb()swls()tb()tics_l()tics_s()trait_rumination()tsgs()type_d()wpi()- Submodules
- biopsykit.questionnaires.questionnaires module
psqi()mves()tics_l()tics_s()pss()cesd()ads_l()ghq()hads()type_d()rse()scs()midi()tsgs()rmidi()lsq()ctq()peat()purpose_life()trait_rumination()besaa()fscrs()pasa()ssgs()panas()state_rumination()abi()stadi()svf_120()svf_42()brief_cope()bfi_k()rsq()sss()fkk()bidr()kkg()fee()mbi_gs()mbi_gss()mlq()pfb()asq()asq_mod()mdbf()meq()kab()stai_short()idq_pre_scan()idq_post_scan()clq()mkhai()abi_ms()asi()erq()phq()resilience()sci()bfi_10()swls()swb()sop()ie_4()sds()tb()asku()wpi()eval_clinic()sssq()
- biopsykit.questionnaires.utils module
- biopsykit.questionnaires.questionnaires module
- biopsykit.saliva package
- biopsykit.signals package
- biopsykit.sleep package
- biopsykit.stats package
- biopsykit.utils package
- Submodules
- biopsykit.utils.array_handling module
sanitize_input_1d()sanitize_input_nd()sanitize_input_series()sanitize_input_dataframe_1d()find_extrema_in_radius()remove_outlier_and_interpolate()sliding_window()sanitize_sliding_window_input()sliding_window_view()downsample()bool_array_to_start_end_array()split_array_equally()accumulate_array()add_datetime_index()
- biopsykit.utils.data_processing module
split_data()exclude_subjects()normalize_to_phase()resample_sec()resample_dict_sec()select_dict_phases()rearrange_subject_data_dict()cut_phases_to_shortest()merge_study_data_dict()split_dict_into_subphases()get_subphase_durations()add_subject_conditions()split_subject_conditions()mean_per_subject_dict()mean_se_per_phase()
- biopsykit.utils.dataframe_handling module
- biopsykit.utils.dtypes module
Acc1dDataFrameAcc3dDataFrameBPointDataFrameBiomarkerRawDataFrameCPointDataFrameCodebookDataFrameEcgRawDataFrameEcgResultDataFrameGyr1dDataFrameGyr3dDataFrameHeartRateDataFrameHeartRatePhaseDictHeartRateStudyDataDictHeartRateSubjectDataDictHeartbeatSegmentationDataFrameIcgRawDataFrameImuDataFrameMeanSeDataFrameMergedStudyDataDictPepResultDataFramePhaseDictQPeakDataFrameRPeakDataFrameSalivaFeatureDataFrameSalivaMeanSeDataFrameSalivaRawDataFrameSleepEndpointDataFrameSleepEndpointDictSleepWakeDataFrameStudyDataDictSubjectConditionDataFrameSubjectConditionDictSubjectDataDictis_acc1d_dataframe()is_acc3d_dataframe()is_b_point_dataframe()is_biomarker_raw_dataframe()is_c_point_dataframe()is_codebook_dataframe()is_ecg_raw_dataframe()is_ecg_result_dataframe()is_gyr1d_dataframe()is_gyr3d_dataframe()is_heart_rate_dataframe()is_heartbeat_segmentation_dataframe()is_hr_phase_dict()is_hr_subject_data_dict()is_icg_raw_dataframe()is_imu_dataframe()is_mean_se_dataframe()is_merged_study_data_dict()is_pep_result_dataframe()is_phase_dict()is_q_peak_dataframe()is_r_peak_dataframe()is_saliva_feature_dataframe()is_saliva_mean_se_dataframe()is_saliva_raw_dataframe()is_sleep_endpoint_dataframe()is_sleep_endpoint_dict()is_sleep_wake_dataframe()is_study_data_dict()is_subject_condition_dataframe()is_subject_condition_dict()is_subject_data_dict()
- biopsykit.utils.exceptions module
- biopsykit.utils.file_handling module
- biopsykit.utils.functions module
- biopsykit.utils.legacy_helper module
- biopsykit.utils.time module
- biopsykit.utils.array_handling module
- Submodules
Submodules¶
- biopsykit.example_data module
get_condition_list_example()get_ecg_example()get_ecg_example_02()get_ecg_path_example()get_ecg_processing_results_path_example()get_eeg_example()get_hr_ensemble_sample()get_hr_result_sample()get_hr_subject_data_dict_example()get_hr_subject_data_dict_tuple_example()get_mist_hr_example()get_questionnaire_example()get_questionnaire_example_wrong_range()get_saliva_example()get_saliva_example_plate_format()get_saliva_mean_se_example()get_sleep_analyzer_raw_example()get_sleep_analyzer_raw_file()get_sleep_analyzer_raw_file_unformatted()get_sleep_analyzer_summary_example()get_sleep_imu_example()get_stats_example()get_time_log_example()