biopsykit.signals.ecg.hrv_extraction package

Extract HRV features from extracted R-peaks.

class biopsykit.signals.ecg.hrv_extraction.HrvExtraction(hrv_types='default')[source]

Bases: Algorithm

Initialize new HrvExtraction algorithm instance.

This algorithm extracts heart rate variability (HRV) features from the R-peak data using the NeuroKit2 library.

Parameters

hrv_types (str or sequence of str, optional) –

The types of HRV features to extract. Options are:

  • ”default”: Extracts the default HRV features (time- and frequency-domain).

  • ”all”: Extracts all available HRV features (time, frequency, and nonlinear).

  • ”time” or “hrv_time”: Extracts time-domain HRV features.

  • ”frequency” or “hrv_frequency”: Extracts frequency-domain HRV features.

  • ”nonlinear” or “hrv_nonlinear”: Extracts nonlinear HRV features.

Default: “default”

HRV_TYPES: ClassVar[list[str]] = ['hrv_time', 'hrv_frequency', 'hrv_nonlinear']
HRV_METHODS: ClassVar[dict[str, collections.abc.Callable]] = {'hrv_frequency': <function hrv_frequency>, 'hrv_nonlinear': <function hrv_nonlinear>, 'hrv_time': <function hrv_time>}
hrv_extracted_: DataFrame
hrv_types: Sequence[str]
extract(*, rpeaks, sampling_rate_hz)[source]

Extract heart rate variability (HRV) features from the R-peak data.

Parameters

  • rpeaks (DataFrame) – The R-peak data. The DataFrame contains the R-peak locations, with the index representing the heartbeat IDs and the column “r_peak_sample” containing the R-peak samples.

  • sampling_rate_hz (float) – The sampling rate of the ECG signal in Hz.

Return type

Self

biopsykit.signals.ecg.event_extraction package biopsykit.signals.ecg.outlier_correction package