Index

A

abi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) abi_ms() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) Acc1dDataFrame (in module biopsykit.utils.dtypes) Acc3dDataFrame (in module biopsykit.utils.dtypes) accumulate_array() (in module biopsykit.utils.array_handling) activity_counts_ (biopsykit.signals.imu.activity_counts.ActivityCounts attribute) ActivityCounts (class in biopsykit.signals.imu.activity_counts) add_datetime_index() (in module biopsykit.utils.array_handling) add_hr_data() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) add_hr_ensemble() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) add_hr_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) add_hrv_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) add_saliva_data() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) add_space_to_camel() (in module biopsykit.utils.dataframe_handling)

add_subject_conditions() (in module biopsykit.utils.data_processing) ads_l() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) agg_type (biopsykit.signals.ecg.aggregation.HeartRateAggregation attribute) AGG_TYPES (biopsykit.signals.ecg.aggregation.HeartRateAggregation attribute) apply() (biopsykit.signals.ecg.aggregation.HeartRateAggregation method) (biopsykit.signals.ecg.aggregation.HeartRateResampling method) (biopsykit.signals.ecg.transformation.HeartRateNormalization method) (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) apply_codebook() (in module biopsykit.utils.dataframe_handling) asi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) asku() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) asq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) asq_mod() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) auc() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva)

B

b_point_slope_threshold_01 (biopsykit.signals.icg.event_extraction.BPointExtractionPale2021 attribute) b_point_slope_threshold_02 (biopsykit.signals.icg.event_extraction.BPointExtractionPale2021 attribute) BaseBPointExtraction (class in biopsykit.signals.icg.event_extraction) BaseBPointOutlierCorrection (class in biopsykit.signals.icg.outlier_correction) BaseCPointExtraction (class in biopsykit.signals.icg.event_extraction) BaseEcgExtraction (class in biopsykit.signals.ecg.event_extraction) BaseEcgExtractionWithHeartbeats (class in biopsykit.signals.ecg.event_extraction) BaseEcgPreprocessing (class in biopsykit.signals.ecg.preprocessing) BaseHeartbeatSegmentation (class in biopsykit.signals.ecg.segmentation) baseline_hr() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) BaseProtocol (class in biopsykit.protocols) (class in biopsykit.protocols.base) BaseRPeakOutlierDetection (class in biopsykit.signals.ecg.outlier_correction) besaa() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) best_estimator_summary() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) best_hyperparameter_pipeline() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) bfi_10() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) bfi_k() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) bidr() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) bin_scale() (in module biopsykit.questionnaires.utils) BiomarkerRawDataFrame (in module biopsykit.utils.dtypes) BiopacDataset (class in biopsykit.io.biopac) biopsykit module biopsykit.classification module biopsykit.classification.analysis module biopsykit.classification.metrics module biopsykit.classification.model_selection module biopsykit.classification.model_selection.nested_cv module biopsykit.classification.model_selection.sklearn_pipeline_permuter module biopsykit.classification.utils module biopsykit.example_data module biopsykit.io module biopsykit.io.biomarker module biopsykit.io.biopac module biopsykit.io.carwatch_logs module biopsykit.io.ecg module biopsykit.io.eeg module biopsykit.io.fibion module biopsykit.io.io module biopsykit.io.nilspod module biopsykit.io.psg module biopsykit.io.saliva module biopsykit.io.sleep module biopsykit.io.sleep_analyzer module biopsykit.io.tfm module biopsykit.metadata module biopsykit.metadata.metadata module biopsykit.plotting module biopsykit.plotting.plotting module biopsykit.protocols module biopsykit.protocols.base module biopsykit.protocols.car module biopsykit.protocols.cft module biopsykit.protocols.mist module biopsykit.protocols.plotting module biopsykit.protocols.tsst module biopsykit.questionnaires module biopsykit.questionnaires.questionnaires module biopsykit.questionnaires.utils module biopsykit.saliva module biopsykit.saliva.saliva module biopsykit.saliva.utils module biopsykit.signals module biopsykit.signals.ecg module biopsykit.signals.ecg.aggregation module biopsykit.signals.ecg.ecg module biopsykit.signals.ecg.event_extraction module biopsykit.signals.ecg.hrv_extraction module biopsykit.signals.ecg.outlier_correction module

biopsykit.signals.ecg.plotting module biopsykit.signals.ecg.preprocessing module biopsykit.signals.ecg.segmentation module biopsykit.signals.ecg.transformation module biopsykit.signals.eeg module biopsykit.signals.eeg.eeg module biopsykit.signals.icg module biopsykit.signals.icg.event_extraction module biopsykit.signals.icg.outlier_correction module biopsykit.signals.icg.preprocessing module biopsykit.signals.imu module biopsykit.signals.imu.activity_counts module biopsykit.signals.imu.feature_extraction module biopsykit.signals.imu.feature_extraction.static_moments module biopsykit.signals.imu.imu module biopsykit.signals.imu.rest_periods module biopsykit.signals.imu.static_moment_detection module biopsykit.signals.imu.wear_detection module biopsykit.signals.pep module biopsykit.signals.rsp module biopsykit.signals.rsp.rsp module biopsykit.sleep module biopsykit.sleep.plotting module biopsykit.sleep.psg module biopsykit.sleep.sleep_endpoints module biopsykit.sleep.sleep_endpoints.sleep_endpoints module biopsykit.sleep.sleep_processing_pipeline module biopsykit.sleep.sleep_processing_pipeline.sleep_processing_pipeline module biopsykit.sleep.sleep_wake_detection module biopsykit.sleep.sleep_wake_detection.algorithms module biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke module biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old module biopsykit.sleep.sleep_wake_detection.algorithms.sadeh module biopsykit.sleep.sleep_wake_detection.algorithms.sazonov module biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic module biopsykit.sleep.sleep_wake_detection.algorithms.webster module biopsykit.sleep.sleep_wake_detection.sleep_wake_detection module biopsykit.sleep.sleep_wake_detection.utils module biopsykit.sleep.utils module biopsykit.stats module biopsykit.stats.multicoll module biopsykit.stats.regression module biopsykit.stats.stats module biopsykit.utils module biopsykit.utils.array_handling module biopsykit.utils.data_processing module biopsykit.utils.dataframe_handling module biopsykit.utils.dtypes module biopsykit.utils.exceptions module biopsykit.utils.file_handling module biopsykit.utils.functions module biopsykit.utils.legacy_helper module biopsykit.utils.time module bmi() (in module biopsykit.metadata) (in module biopsykit.metadata.metadata) bool_array_to_start_end_array() (in module biopsykit.utils.array_handling) BPointDataFrame (in module biopsykit.utils.dtypes) BPointExtractionArbol2017IsoelectricCrossings (class in biopsykit.signals.icg.event_extraction) BPointExtractionArbol2017SecondDerivative (class in biopsykit.signals.icg.event_extraction) BPointExtractionArbol2017ThirdDerivative (class in biopsykit.signals.icg.event_extraction) BPointExtractionDebski1993SecondDerivative (class in biopsykit.signals.icg.event_extraction) BPointExtractionDrost2022 (class in biopsykit.signals.icg.event_extraction) BPointExtractionForouzanfar2018 (class in biopsykit.signals.icg.event_extraction) BPointExtractionLozano2007LinearRegression (class in biopsykit.signals.icg.event_extraction) BPointExtractionLozano2007QuadraticRegression (class in biopsykit.signals.icg.event_extraction) BPointExtractionMiljkovic2022 (class in biopsykit.signals.icg.event_extraction) BPointExtractionPale2021 (class in biopsykit.signals.icg.event_extraction) BPointExtractionSherwood1990 (class in biopsykit.signals.icg.event_extraction) BPointExtractionStern1985 (class in biopsykit.signals.icg.event_extraction) brief_cope() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

C

c_point_amplitude_fraction (biopsykit.signals.icg.event_extraction.BPointExtractionPale2021 attribute) calculate() (biopsykit.signals.imu.activity_counts.ActivityCounts method) camel_to_snake() (in module biopsykit.utils.dataframe_handling) CAR (class in biopsykit.protocols) (class in biopsykit.protocols.car) car_plot_params (biopsykit.protocols.CAR attribute) (biopsykit.protocols.car.CAR attribute) car_saliva_plot() (biopsykit.protocols.CAR method) (biopsykit.protocols.car.CAR method) cesd() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) CFT (class in biopsykit.protocols) (class in biopsykit.protocols.cft) cft_duration (biopsykit.protocols.CFT attribute) (biopsykit.protocols.cft.CFT attribute) cft_parameter (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) cft_plot() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) cft_plot_params (biopsykit.protocols.cft.CFT attribute) cft_start (biopsykit.protocols.CFT attribute) (biopsykit.protocols.cft.CFT attribute) CftFeatureExtraction (class in biopsykit.protocols) (class in biopsykit.protocols.cft) CHANNEL_MAPPING (biopsykit.io.tfm.TFMDataset attribute) check_nilspod_dataset_corrupted() (in module biopsykit.io.nilspod) check_tz_aware() (in module biopsykit.utils.time) clean() (biopsykit.signals.ecg.preprocessing.BaseEcgPreprocessing method) (biopsykit.signals.ecg.preprocessing.EcgPreprocessingNeurokit method) (biopsykit.signals.icg.preprocessing.IcgPreprocessingBandpass method) clq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) CodebookDataFrame (in module biopsykit.utils.dtypes) ColeKripke (class in biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke) ColeKripkeOld (class in biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old) compute_additional_metrics() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) (in module biopsykit.classification.metrics) compute_cft_parameter() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) compute_features() (in module biopsykit.signals.imu.feature_extraction.static_moments) compute_hr_above_baseline() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method)

compute_hr_ensemble() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) compute_hr_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) compute_hrv_above_baseline() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) compute_hrv_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) compute_scores() (in module biopsykit.questionnaires.utils) compute_sleep_endpoints() (in module biopsykit.sleep.sleep_endpoints) (in module biopsykit.sleep.sleep_endpoints.sleep_endpoints) convert_acc_data_to_g() (in module biopsykit.signals.imu) (in module biopsykit.signals.imu.imu) convert_nan() (in module biopsykit.utils.dataframe_handling) convert_scale() (in module biopsykit.questionnaires.utils) convert_time_log_datetime() (in module biopsykit.io) (in module biopsykit.io.io) convert_time_log_dict() (in module biopsykit.io) correct_outlier() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrectionHrvLipponen2019 method) (biopsykit.signals.icg.outlier_correction.BaseBPointOutlierCorrection method) (biopsykit.signals.icg.outlier_correction.OutlierCorrectionDummy method) (biopsykit.signals.icg.outlier_correction.OutlierCorrectionForouzanfar2018 method) (biopsykit.signals.icg.outlier_correction.OutlierCorrectionLinearInterpolation method) correct_outliers (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017SecondDerivative attribute) (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017ThirdDerivative attribute) (biopsykit.signals.icg.event_extraction.BPointExtractionDebski1993SecondDerivative attribute) (biopsykit.signals.icg.event_extraction.BPointExtractionForouzanfar2018 attribute) correct_rpeaks() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) correlation_threshold (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionCorrelation attribute) CPointDataFrame (in module biopsykit.utils.dtypes) CPointExtractionScipyFindPeaks (class in biopsykit.signals.icg.event_extraction) crop_scale() (in module biopsykit.questionnaires.utils) ctq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) cut_phases_to_shortest() (in module biopsykit.utils.data_processing) cut_to_shortest (biopsykit.signals.ecg.aggregation.HeartRateResampling attribute) cut_to_wear_block() (biopsykit.signals.imu.wear_detection.WearDetection static method)

D

data (biopsykit.signals.ecg.ecg.EcgProcessor attribute) (biopsykit.signals.eeg.eeg.EegProcessor attribute) (biopsykit.signals.imu.activity_counts.ActivityCounts attribute) data_as_df() (biopsykit.io.biopac.BiopacDataset method) (biopsykit.io.eeg.MuseDataset method) (biopsykit.io.fibion.FibionDataset method) (biopsykit.io.psg.PSGDataset method) (biopsykit.io.tfm.TFMDataset method) DataFrameTransformationError detect_b_point_outlier() (biopsykit.signals.icg.outlier_correction.BaseBPointOutlierCorrection static method) detect_outlier() (biopsykit.signals.ecg.outlier_correction.BaseRPeakOutlierDetection method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionBerntson1990 method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionCorrelation method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionPhysiological method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionQuality method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionRRDiffIntervalStatistics method) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionRRIntervalStatistics method)

display_results() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) downsample() (in module biopsykit.utils.array_handling) duration_baseline_sec (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) duration_cft_sec (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) duration_recovery_sec (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute)

E

ecg (biopsykit.signals.ecg.ecg.EcgProcessor property) (biopsykit.signals.ecg.EcgProcessor property) ecg_clean_ (biopsykit.signals.ecg.EcgProcessingPipeline attribute) (biopsykit.signals.ecg.preprocessing.BaseEcgPreprocessing attribute) ecg_estimate_rsp() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) ecg_plot() (in module biopsykit.signals.ecg.plotting) ecg_process() (biopsykit.signals.ecg.ecg.EcgProcessor method) (biopsykit.signals.ecg.EcgProcessor method) ecg_processed_ (biopsykit.signals.ecg.event_extraction.RPeakExtractionNeurokit attribute) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection attribute) ecg_raw_ (biopsykit.signals.ecg.EcgProcessingPipeline attribute) ecg_result (biopsykit.signals.ecg.ecg.EcgProcessor attribute) (biopsykit.signals.ecg.EcgProcessor attribute) EcgPreprocessingNeurokit (class in biopsykit.signals.ecg.preprocessing) EcgProcessingError EcgProcessingPipeline (class in biopsykit.signals.ecg) EcgProcessor (class in biopsykit.signals.ecg) (class in biopsykit.signals.ecg.ecg) EcgRawDataFrame (in module biopsykit.utils.dtypes) EcgResultDataFrame (in module biopsykit.utils.dtypes) eeg_result (biopsykit.signals.eeg.eeg.EegProcessor attribute) (biopsykit.signals.eeg.EegProcessor attribute) EegProcessor (class in biopsykit.signals.eeg) (class in biopsykit.signals.eeg.eeg) endpoints_as_df() (in module biopsykit.sleep.sleep_endpoints) (in module biopsykit.sleep.sleep_endpoints.sleep_endpoints) erq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) error_handling (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) eval_clinic() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) event_markers (biopsykit.io.biopac.BiopacDataset property) EventExtractionError exclude_subjects() (in module biopsykit.utils.data_processing) export_figure() (in module biopsykit.utils.file_handling) export_hr_above_baseline_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) export_hr_ensemble() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) export_hr_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method)

export_hrv_above_baseline_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) export_hrv_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) export_metric_summary() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) export_pipeline_score_results() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) export_statistics() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) extract() (biopsykit.protocols.cft.CftFeatureExtraction method) (biopsykit.protocols.CftFeatureExtraction method) (biopsykit.signals.ecg.event_extraction.BaseEcgExtraction method) (biopsykit.signals.ecg.event_extraction.BaseEcgExtractionWithHeartbeats method) (biopsykit.signals.ecg.event_extraction.QPeakExtractionForouzanfar2018 method) (biopsykit.signals.ecg.event_extraction.QPeakExtractionMartinez2004Neurokit method) (biopsykit.signals.ecg.event_extraction.QPeakExtractionSciPyFindPeaksNeurokit method) (biopsykit.signals.ecg.event_extraction.QPeakExtractionVanLien2013 method) (biopsykit.signals.ecg.event_extraction.RPeakExtractionNeurokit method) (biopsykit.signals.ecg.hrv_extraction.HrvExtraction method) (biopsykit.signals.ecg.segmentation.BaseHeartbeatSegmentation method) (biopsykit.signals.ecg.segmentation.HeartbeatSegmentationNeurokit method) (biopsykit.signals.icg.event_extraction.BaseBPointExtraction method) (biopsykit.signals.icg.event_extraction.BaseCPointExtraction method) (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017IsoelectricCrossings method) (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017SecondDerivative method) (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017ThirdDerivative method) (biopsykit.signals.icg.event_extraction.BPointExtractionDebski1993SecondDerivative method) (biopsykit.signals.icg.event_extraction.BPointExtractionDrost2022 method) (biopsykit.signals.icg.event_extraction.BPointExtractionForouzanfar2018 method) (biopsykit.signals.icg.event_extraction.BPointExtractionLozano2007LinearRegression method) (biopsykit.signals.icg.event_extraction.BPointExtractionLozano2007QuadraticRegression method) (biopsykit.signals.icg.event_extraction.BPointExtractionMiljkovic2022 method) (biopsykit.signals.icg.event_extraction.BPointExtractionPale2021 method) (biopsykit.signals.icg.event_extraction.BPointExtractionSherwood1990 method) (biopsykit.signals.icg.event_extraction.BPointExtractionStern1985 method) (biopsykit.signals.icg.event_extraction.CPointExtractionScipyFindPeaks method) (biopsykit.signals.pep.PepExtraction method) extract_cft_interval() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) extract_saliva_columns() (in module biopsykit.saliva.utils) extract_time_from_filename() (in module biopsykit.utils.time)

F

factorize_subject_id() (in module biopsykit.classification.utils) feature_boxplot() (in module biopsykit.plotting) (in module biopsykit.plotting.plotting) feature_pairplot() (in module biopsykit.plotting) (in module biopsykit.plotting.plotting) FeatureComputationError fee() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) FibionDataset (class in biopsykit.io.fibion) FileExtensionError find_cols() (in module biopsykit.questionnaires.utils) find_extrema_in_radius() (in module biopsykit.utils.array_handling) find_first_static_window_multi_sensor() (in module biopsykit.signals.imu.static_moment_detection) find_static_moments() (in module biopsykit.signals.imu.static_moment_detection) fit() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) (biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke.ColeKripke method) (biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old.ColeKripkeOld method) (biopsykit.sleep.sleep_wake_detection.algorithms.sadeh.Sadeh method) (biopsykit.sleep.sleep_wake_detection.algorithms.sazonov.Sazonov method) (biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic.ScrippsClinic method) (biopsykit.sleep.sleep_wake_detection.algorithms.webster.Webster method)

fit_and_save_intermediate() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) fkk() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) from_acq_file() (biopsykit.io.biopac.BiopacDataset class method) from_csv() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter class method) (biopsykit.classification.model_selection.SklearnPipelinePermuter class method) from_csv_file() (biopsykit.io.eeg.MuseDataset class method) (biopsykit.io.fibion.FibionDataset class method) from_edf_file() (biopsykit.io.fibion.FibionDataset class method) (biopsykit.io.psg.PSGDataset class method) from_file() (biopsykit.protocols.base.BaseProtocol class method) (biopsykit.protocols.BaseProtocol class method) from_folder() (biopsykit.io.fibion.FibionDataset class method) from_mat_file() (biopsykit.io.tfm.TFMDataset class method) from_pickle() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter static method) (biopsykit.classification.model_selection.SklearnPipelinePermuter static method) fscrs() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

G

gender_counts() (in module biopsykit.metadata) (in module biopsykit.metadata.metadata) get_condition_list_example() (in module biopsykit.example_data) get_default_biopsykit_pipeline() (biopsykit.signals.ecg.EcgProcessingPipeline class method) get_ecg_example() (in module biopsykit.example_data) get_ecg_example_02() (in module biopsykit.example_data) get_ecg_path_example() (in module biopsykit.example_data) get_ecg_processing_results_path_example() (in module biopsykit.example_data) get_eeg_example() (in module biopsykit.example_data) get_hr_ensemble() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) get_hr_ensemble_sample() (in module biopsykit.example_data) get_hr_result_sample() (in module biopsykit.example_data) get_hr_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) get_hr_subject_data_dict_example() (in module biopsykit.example_data) get_hr_subject_data_dict_tuple_example() (in module biopsykit.example_data) get_hrv_results() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) get_major_wear_block() (biopsykit.signals.imu.wear_detection.WearDetection static method) get_mist_hr_example() (in module biopsykit.example_data) get_nilspod_dataset_corrupted_info() (in module biopsykit.io.nilspod) get_questionnaire_example() (in module biopsykit.example_data) get_questionnaire_example_wrong_range() (in module biopsykit.example_data)

get_saliva_column_suggestions() (in module biopsykit.saliva.utils) get_saliva_example() (in module biopsykit.example_data) get_saliva_example_plate_format() (in module biopsykit.example_data) get_saliva_mean_se_example() (in module biopsykit.example_data) get_sleep_analyzer_raw_example() (in module biopsykit.example_data) get_sleep_analyzer_raw_file() (in module biopsykit.example_data) get_sleep_analyzer_raw_file_unformatted() (in module biopsykit.example_data) get_sleep_analyzer_summary_example() (in module biopsykit.example_data) get_sleep_imu_example() (in module biopsykit.example_data) get_stats_example() (in module biopsykit.example_data) get_subject_dirs() (in module biopsykit.utils.file_handling) get_subphase_durations() (in module biopsykit.utils.data_processing) get_supported_questionnaires() (in module biopsykit.questionnaires.utils) get_time_from_date() (in module biopsykit.utils.time) get_time_log_example() (in module biopsykit.example_data) ghq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) group_level (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) (biopsykit.signals.ecg.aggregation.HeartRateAggregation attribute) (biopsykit.signals.ecg.aggregation.HeartRateResampling attribute) (biopsykit.signals.ecg.transformation.HeartRateNormalization attribute) Gyr1dDataFrame (in module biopsykit.utils.dtypes) Gyr3dDataFrame (in module biopsykit.utils.dtypes)

H

hads() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) handle_missing_events (biopsykit.signals.ecg.EcgProcessingPipeline attribute) handle_negative_pep (biopsykit.signals.pep.PepExtraction attribute) heart_rate (biopsykit.signals.ecg.ecg.EcgProcessor attribute) (biopsykit.signals.ecg.EcgProcessor attribute) heartbeat_list_ (biopsykit.signals.ecg.segmentation.BaseHeartbeatSegmentation attribute), [1] (biopsykit.signals.ecg.segmentation.HeartbeatSegmentationNeurokit attribute) HeartbeatSegmentationDataFrame (in module biopsykit.utils.dtypes) HeartbeatSegmentationNeurokit (class in biopsykit.signals.ecg.segmentation) HeartRateAggregation (class in biopsykit.signals.ecg.aggregation) HeartRateDataFrame (in module biopsykit.utils.dtypes) HeartRateNormalization (class in biopsykit.signals.ecg.transformation) HeartRatePhaseDict (in module biopsykit.utils.dtypes) HeartRateResampling (class in biopsykit.signals.ecg.aggregation) HeartRateStudyDataDict (in module biopsykit.utils.dtypes) HeartRateSubjectDataDict (in module biopsykit.utils.dtypes) hr_above_baseline_results (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hr_data (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hr_distribution_plot() (in module biopsykit.signals.ecg.plotting) hr_ensemble (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hr_ensemble_plot() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) (biopsykit.protocols.MIST method) (biopsykit.protocols.mist.MIST method) (in module biopsykit.protocols.plotting) hr_ensemble_plot_df() (in module biopsykit.protocols.plotting) hr_ensemble_plot_params (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute)

hr_mean_plot() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) (in module biopsykit.protocols.plotting) hr_mean_plot_params (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hr_plot() (in module biopsykit.signals.ecg.plotting) hr_result (biopsykit.signals.ecg.ecg.EcgProcessor property) (biopsykit.signals.ecg.EcgProcessor property) hr_results (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hr_thresholds (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionPhysiological attribute) hrv_above_baseline_results (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) hrv_batch_process() (biopsykit.signals.ecg.ecg.EcgProcessor method) (biopsykit.signals.ecg.EcgProcessor method) hrv_extracted_ (biopsykit.signals.ecg.EcgProcessingPipeline attribute) (biopsykit.signals.ecg.hrv_extraction.HrvExtraction attribute) hrv_extraction_algo (biopsykit.signals.ecg.EcgProcessingPipeline attribute) hrv_frequency_plot() (in module biopsykit.signals.ecg.plotting) HRV_METHODS (biopsykit.signals.ecg.hrv_extraction.HrvExtraction attribute) hrv_plot() (in module biopsykit.signals.ecg.plotting) hrv_poincare_plot() (in module biopsykit.signals.ecg.plotting) hrv_process() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) hrv_r_peak_correction_algo (biopsykit.signals.ecg.EcgProcessingPipeline attribute) hrv_results (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) HRV_TYPES (biopsykit.signals.ecg.hrv_extraction.HrvExtraction attribute) hrv_types (biopsykit.signals.ecg.hrv_extraction.HrvExtraction attribute) HrvExtraction (class in biopsykit.signals.ecg.hrv_extraction) hyper_search_dict (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute)

I

icg_clean_ (biopsykit.signals.icg.preprocessing.IcgPreprocessingBandpass attribute) IcgPreprocessingBandpass (class in biopsykit.signals.icg.preprocessing) IcgRawDataFrame (in module biopsykit.utils.dtypes) idq_post_scan() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) idq_pre_scan() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) ie_4() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) imputation_params (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection attribute) imputation_type (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection attribute) IMPUTATION_TYPES (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection attribute) ImuDataFrame (in module biopsykit.utils.dtypes) individual_beats_plot() (in module biopsykit.signals.ecg.plotting) initial_value() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) int_from_str_col() (in module biopsykit.utils.dataframe_handling) int_from_str_idx() (in module biopsykit.utils.dataframe_handling) invert() (in module biopsykit.questionnaires.utils) is_acc1d_dataframe() (in module biopsykit.utils.dtypes) is_acc3d_dataframe() (in module biopsykit.utils.dtypes) is_b_point_dataframe() (in module biopsykit.utils.dtypes) is_biomarker_raw_dataframe() (in module biopsykit.utils.dtypes) is_c_point_dataframe() (in module biopsykit.utils.dtypes) is_codebook_dataframe() (in module biopsykit.utils.dtypes) is_ecg_raw_dataframe() (in module biopsykit.utils.dtypes)

is_ecg_result_dataframe() (in module biopsykit.utils.dtypes) is_excel_file() (in module biopsykit.utils.file_handling) is_gyr1d_dataframe() (in module biopsykit.utils.dtypes) is_gyr3d_dataframe() (in module biopsykit.utils.dtypes) is_heart_rate_dataframe() (in module biopsykit.utils.dtypes) is_heartbeat_segmentation_dataframe() (in module biopsykit.utils.dtypes) is_hr_phase_dict() (in module biopsykit.utils.dtypes) is_hr_subject_data_dict() (in module biopsykit.utils.dtypes) is_icg_raw_dataframe() (in module biopsykit.utils.dtypes) is_imu_dataframe() (in module biopsykit.utils.dtypes) is_mean_se_dataframe() (in module biopsykit.utils.dtypes) is_merged_study_data_dict() (in module biopsykit.utils.dtypes) is_pep_result_dataframe() (in module biopsykit.utils.dtypes) is_phase_dict() (in module biopsykit.utils.dtypes) is_q_peak_dataframe() (in module biopsykit.utils.dtypes) is_r_peak_dataframe() (in module biopsykit.utils.dtypes) is_saliva_feature_dataframe() (in module biopsykit.utils.dtypes) is_saliva_mean_se_dataframe() (in module biopsykit.utils.dtypes) is_saliva_raw_dataframe() (in module biopsykit.utils.dtypes) is_sleep_endpoint_dataframe() (in module biopsykit.utils.dtypes) is_sleep_endpoint_dict() (in module biopsykit.utils.dtypes) is_sleep_wake_dataframe() (in module biopsykit.utils.dtypes) is_study_data_dict() (in module biopsykit.utils.dtypes) is_subject_condition_dataframe() (in module biopsykit.utils.dtypes) is_subject_condition_dict() (in module biopsykit.utils.dtypes) is_subject_data_dict() (in module biopsykit.utils.dtypes)

K

kab() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

kkg() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

L

legacy_convert_hr_phase_dict() (in module biopsykit.utils.legacy_helper) lineplot() (in module biopsykit.plotting) (in module biopsykit.plotting.plotting) load_atimelogger_file() (in module biopsykit.io) load_biomarker_results() (in module biopsykit.io.biomarker) load_codebook() (in module biopsykit.io) (in module biopsykit.io.io) load_csv_nilspod() (in module biopsykit.io.nilspod) load_data() (biopsykit.io.psg.PSGDataset class method) load_data_folder() (biopsykit.io.psg.PSGDataset class method) load_data_raw() (biopsykit.io.psg.PSGDataset class method) load_dataset_nilspod() (in module biopsykit.io.nilspod) load_eeg_raw_muse() (in module biopsykit.io.eeg) load_folder_nilspod() (in module biopsykit.io.nilspod) load_ground_truth() (biopsykit.io.psg.PSGDataset method) load_hr_phase_dict() (in module biopsykit.io.ecg) load_hr_phase_dict_csv() (in module biopsykit.io.ecg) load_hr_phase_dict_folder() (in module biopsykit.io.ecg) load_log_one_subject() (in module biopsykit.io.carwatch_logs) load_logs_all_subjects() (in module biopsykit.io.carwatch_logs)

load_long_format_csv() (in module biopsykit.io) (in module biopsykit.io.io) load_pandas_dict_excel() (in module biopsykit.io) (in module biopsykit.io.io) load_questionnaire_data() (in module biopsykit.io) (in module biopsykit.io.io) load_saliva_plate() (in module biopsykit.io.biomarker) (in module biopsykit.io.saliva) load_saliva_wide_format() (in module biopsykit.io.biomarker) (in module biopsykit.io.saliva) load_subject_condition_list() (in module biopsykit.io) (in module biopsykit.io.io) load_synced_session_nilspod() (in module biopsykit.io.nilspod) load_time_log() (in module biopsykit.io) (in module biopsykit.io.io) load_withings_sleep_analyzer_raw_file() (in module biopsykit.io.sleep_analyzer) load_withings_sleep_analyzer_raw_folder() (in module biopsykit.io.sleep_analyzer) load_withings_sleep_analyzer_summary() (in module biopsykit.io.sleep_analyzer) log_folder_to_dataframe() (in module biopsykit.io.carwatch_logs) lsq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

M

max_increase() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) max_value() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) mbi_gs() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) mbi_gss() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) mdbf() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) mean_bradycardia() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) mean_orientation() (in module biopsykit.signals.imu.feature_extraction.static_moments) mean_per_subject_dict() (in module biopsykit.utils.data_processing) mean_pipeline_score_results() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) mean_se() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) (in module biopsykit.utils.functions) mean_se_per_phase() (in module biopsykit.utils.data_processing) MeanSeDataFrame (in module biopsykit.utils.dtypes) meq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) merge_permuter_instances() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter class method) (biopsykit.classification.model_selection.SklearnPipelinePermuter class method) merge_study_data_dict() (in module biopsykit.utils.data_processing) MergedStudyDataDict (in module biopsykit.utils.dtypes) method (biopsykit.signals.ecg.event_extraction.RPeakExtractionNeurokit attribute) (biopsykit.signals.ecg.preprocessing.EcgPreprocessingNeurokit attribute) (biopsykit.signals.icg.preprocessing.IcgPreprocessingBandpass attribute) metric_summary() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) metric_summary_to_latex() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) (in module biopsykit.classification.analysis) midi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) MIST (class in biopsykit.protocols) (class in biopsykit.protocols.mist) mkdirs() (in module biopsykit.utils.file_handling) mkhai() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) mlq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) model_combinations (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute) models (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute) module biopsykit biopsykit.classification biopsykit.classification.analysis biopsykit.classification.metrics biopsykit.classification.model_selection biopsykit.classification.model_selection.nested_cv biopsykit.classification.model_selection.sklearn_pipeline_permuter biopsykit.classification.utils biopsykit.example_data biopsykit.io biopsykit.io.biomarker biopsykit.io.biopac biopsykit.io.carwatch_logs biopsykit.io.ecg biopsykit.io.eeg biopsykit.io.fibion biopsykit.io.io biopsykit.io.nilspod biopsykit.io.psg biopsykit.io.saliva biopsykit.io.sleep biopsykit.io.sleep_analyzer biopsykit.io.tfm biopsykit.metadata biopsykit.metadata.metadata biopsykit.plotting biopsykit.plotting.plotting biopsykit.protocols biopsykit.protocols.base biopsykit.protocols.car biopsykit.protocols.cft biopsykit.protocols.mist biopsykit.protocols.plotting biopsykit.protocols.tsst biopsykit.questionnaires biopsykit.questionnaires.questionnaires biopsykit.questionnaires.utils biopsykit.saliva biopsykit.saliva.saliva biopsykit.saliva.utils biopsykit.signals biopsykit.signals.ecg biopsykit.signals.ecg.aggregation biopsykit.signals.ecg.ecg biopsykit.signals.ecg.event_extraction biopsykit.signals.ecg.hrv_extraction biopsykit.signals.ecg.outlier_correction biopsykit.signals.ecg.plotting biopsykit.signals.ecg.preprocessing biopsykit.signals.ecg.segmentation biopsykit.signals.ecg.transformation biopsykit.signals.eeg biopsykit.signals.eeg.eeg biopsykit.signals.icg biopsykit.signals.icg.event_extraction biopsykit.signals.icg.outlier_correction biopsykit.signals.icg.preprocessing biopsykit.signals.imu biopsykit.signals.imu.activity_counts biopsykit.signals.imu.feature_extraction biopsykit.signals.imu.feature_extraction.static_moments biopsykit.signals.imu.imu biopsykit.signals.imu.rest_periods biopsykit.signals.imu.static_moment_detection biopsykit.signals.imu.wear_detection biopsykit.signals.pep biopsykit.signals.rsp biopsykit.signals.rsp.rsp biopsykit.sleep biopsykit.sleep.plotting biopsykit.sleep.psg biopsykit.sleep.sleep_endpoints biopsykit.sleep.sleep_endpoints.sleep_endpoints biopsykit.sleep.sleep_processing_pipeline biopsykit.sleep.sleep_processing_pipeline.sleep_processing_pipeline biopsykit.sleep.sleep_wake_detection biopsykit.sleep.sleep_wake_detection.algorithms biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old biopsykit.sleep.sleep_wake_detection.algorithms.sadeh biopsykit.sleep.sleep_wake_detection.algorithms.sazonov biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic biopsykit.sleep.sleep_wake_detection.algorithms.webster biopsykit.sleep.sleep_wake_detection.sleep_wake_detection biopsykit.sleep.sleep_wake_detection.utils biopsykit.sleep.utils biopsykit.stats biopsykit.stats.multicoll biopsykit.stats.regression biopsykit.stats.stats biopsykit.utils biopsykit.utils.array_handling biopsykit.utils.data_processing biopsykit.utils.dataframe_handling biopsykit.utils.dtypes biopsykit.utils.exceptions biopsykit.utils.file_handling biopsykit.utils.functions biopsykit.utils.legacy_helper biopsykit.utils.time

moving_average_window (biopsykit.signals.icg.event_extraction.BPointExtractionLozano2007LinearRegression attribute) multi_feature_boxplot() (in module biopsykit.plotting) (in module biopsykit.plotting.plotting) multi_xs() (in module biopsykit.utils.dataframe_handling) multicomp() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) MuseDataset (class in biopsykit.io.eeg) mves() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

N

name (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute)

nested_cv_param_search() (in module biopsykit.classification.model_selection) (in module biopsykit.classification.model_selection.nested_cv) norm_level (biopsykit.signals.ecg.transformation.HeartRateNormalization attribute) normalize_to_phase() (in module biopsykit.utils.data_processing)

O

onset() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) outlier_correction_algo (biopsykit.signals.ecg.EcgProcessingPipeline attribute) outlier_corrections() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) outlier_detection_algos (biopsykit.signals.ecg.EcgProcessingPipeline attribute) outlier_params_default() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method)

OutlierCorrectionDummy (class in biopsykit.signals.icg.outlier_correction) OutlierCorrectionForouzanfar2018 (class in biopsykit.signals.icg.outlier_correction) OutlierCorrectionLinearInterpolation (class in biopsykit.signals.icg.outlier_correction) output_ (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) (biopsykit.signals.ecg.aggregation.HeartRateAggregation attribute) (biopsykit.signals.ecg.aggregation.HeartRateResampling attribute) (biopsykit.signals.ecg.transformation.HeartRateNormalization attribute)

P

panas() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) param_searches (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute) params (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute) pasa() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) peak_bradycardia() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) peat() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) pep_results_ (biopsykit.signals.pep.PepExtraction attribute) PepExtraction (class in biopsykit.signals.pep) PepResultDataFrame (in module biopsykit.utils.dtypes) pfb() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) PhaseDict (in module biopsykit.utils.dtypes) phq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) pipeline_score_results() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) plot_conf_matrix() (in module biopsykit.classification.analysis) plot_conf_matrix_proba() (in module biopsykit.classification.analysis) points_ (biopsykit.signals.ecg.outlier_correction.BaseRPeakOutlierDetection attribute) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrection attribute) (biopsykit.signals.ecg.outlier_correction.RPeakOutlierCorrectionHrvLipponen2019 attribute) (biopsykit.signals.icg.event_extraction.BaseBPointExtraction attribute) (biopsykit.signals.icg.event_extraction.BaseCPointExtraction attribute) (biopsykit.signals.icg.outlier_correction.BaseBPointOutlierCorrection attribute)

poly_fit() (biopsykit.protocols.CFT method) (biopsykit.protocols.cft.CFT method) predict() (biopsykit.signals.imu.rest_periods.RestPeriods method) (biopsykit.signals.imu.wear_detection.WearDetection method) (biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke.ColeKripke method) (biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old.ColeKripkeOld method) (biopsykit.sleep.sleep_wake_detection.algorithms.sadeh.Sadeh method) (biopsykit.sleep.sleep_wake_detection.algorithms.sazonov.Sazonov method) (biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic.ScrippsClinic method) (biopsykit.sleep.sleep_wake_detection.algorithms.webster.Webster method) (biopsykit.sleep.sleep_wake_detection.sleep_wake_detection.SleepWakeDetection method) (biopsykit.sleep.sleep_wake_detection.SleepWakeDetection method) predict_pipeline_acceleration() (in module biopsykit.sleep.sleep_processing_pipeline) (in module biopsykit.sleep.sleep_processing_pipeline.sleep_processing_pipeline) predict_pipeline_actigraph() (in module biopsykit.sleep.sleep_processing_pipeline) (in module biopsykit.sleep.sleep_processing_pipeline.sleep_processing_pipeline) predict_proba_from_estimator() (in module biopsykit.classification.analysis) predictions_as_df() (in module biopsykit.classification.analysis) prepare_df_sklearn() (in module biopsykit.classification.utils) preprocessing_algo (biopsykit.signals.ecg.EcgProcessingPipeline attribute) PRPROCESSING_METHODS (biopsykit.signals.ecg.preprocessing.EcgPreprocessingNeurokit attribute) PSGDataset (class in biopsykit.io.psg) psqi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) pss() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) purpose_life() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

Q

QPeakDataFrame (in module biopsykit.utils.dtypes) QPeakExtractionForouzanfar2018 (class in biopsykit.signals.ecg.event_extraction) QPeakExtractionMartinez2004Neurokit (class in biopsykit.signals.ecg.event_extraction)

QPeakExtractionSciPyFindPeaksNeurokit (class in biopsykit.signals.ecg.event_extraction) QPeakExtractionVanLien2013 (class in biopsykit.signals.ecg.event_extraction) quality_threshold (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionQuality attribute)

R

r_peak_algo (biopsykit.signals.ecg.EcgProcessingPipeline attribute) r_peak_detection_method (biopsykit.signals.ecg.segmentation.HeartbeatSegmentationNeurokit attribute) random_state (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) rearrange_subject_data_dict() (in module biopsykit.utils.data_processing) refit (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) relative_band_energy() (biopsykit.signals.eeg.eeg.EegProcessor method) (biopsykit.signals.eeg.EegProcessor method) remove_multicollinearity_correlation() (in module biopsykit.stats.multicoll) remove_outlier_and_interpolate() (in module biopsykit.utils.array_handling) replace_missing_data() (in module biopsykit.utils.dataframe_handling) resample_dict_sec() (in module biopsykit.utils.data_processing) resample_rate_hz (biopsykit.signals.ecg.aggregation.HeartRateResampling attribute) resample_sec() (in module biopsykit.utils.data_processing) rescore() (in module biopsykit.sleep.sleep_wake_detection.utils) resilience() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) RestPeriods (class in biopsykit.signals.imu.rest_periods) results (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter property) (biopsykit.classification.model_selection.SklearnPipelinePermuter property) results_cat() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) results_to_latex_table() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) rmidi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) rpeak_data (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute)

RPeakDataFrame (in module biopsykit.utils.dtypes) RPeakExtractionNeurokit (class in biopsykit.signals.ecg.event_extraction) RPeakOutlierCorrection (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierCorrectionHrvLipponen2019 (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionBerntson1990 (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionCorrelation (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionPhysiological (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionQuality (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionRRDiffIntervalStatistics (class in biopsykit.signals.ecg.outlier_correction) RPeakOutlierDetectionRRIntervalStatistics (class in biopsykit.signals.ecg.outlier_correction) rpeaks (biopsykit.signals.ecg.ecg.EcgProcessor attribute) (biopsykit.signals.ecg.EcgProcessor attribute) rpeaks_ (biopsykit.signals.ecg.EcgProcessingPipeline attribute) rpeaks_raw_ (biopsykit.signals.ecg.EcgProcessingPipeline attribute) rr_diff_statistics_threshold (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionRRDiffIntervalStatistics attribute) rr_distribution_plot() (in module biopsykit.signals.ecg.plotting) rr_statistics_threshold (biopsykit.signals.ecg.outlier_correction.RPeakOutlierDetectionRRIntervalStatistics attribute) rsa_process() (biopsykit.signals.ecg.ecg.EcgProcessor class method) (biopsykit.signals.ecg.EcgProcessor class method) rse() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) rsp_compute_rate() (biopsykit.signals.rsp.rsp.RspProcessor class method) (biopsykit.signals.rsp.RspProcessor class method) RspProcessor (class in biopsykit.signals.rsp) (class in biopsykit.signals.rsp.rsp) rsq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) run() (biopsykit.signals.ecg.EcgProcessingPipeline method)

S

Sadeh (class in biopsykit.sleep.sleep_wake_detection.algorithms.sadeh) saliva_data (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) saliva_feature_boxplot() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) (in module biopsykit.protocols.plotting) saliva_feature_wide_to_long() (in module biopsykit.saliva.utils) saliva_multi_feature_boxplot() (biopsykit.protocols.base.BaseProtocol static method) (biopsykit.protocols.BaseProtocol static method) (in module biopsykit.protocols.plotting) saliva_plot() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) (in module biopsykit.protocols.plotting) saliva_plot_combine_legend() (biopsykit.protocols.base.BaseProtocol static method) (biopsykit.protocols.BaseProtocol static method) (in module biopsykit.protocols.plotting) saliva_plot_params (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) saliva_types (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) SalivaFeatureDataFrame (in module biopsykit.utils.dtypes) SalivaMeanSeDataFrame (in module biopsykit.utils.dtypes) SalivaRawDataFrame (in module biopsykit.utils.dtypes) sample_times (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) sample_times_datetime_to_minute() (in module biopsykit.saliva.utils) sampling_rate (biopsykit.signals.ecg.ecg.EcgProcessor attribute) (biopsykit.signals.eeg.eeg.EegProcessor attribute) (biopsykit.signals.imu.activity_counts.ActivityCounts attribute) (biopsykit.signals.imu.rest_periods.RestPeriods attribute) (biopsykit.signals.imu.wear_detection.WearDetection attribute) SAMPLING_RATE_HZ (biopsykit.io.eeg.MuseDataset attribute) sampling_rate_hz (biopsykit.io.eeg.MuseDataset property) sanitize_input_1d() (in module biopsykit.utils.array_handling) sanitize_input_dataframe_1d() (in module biopsykit.utils.array_handling) sanitize_input_nd() (in module biopsykit.utils.array_handling) sanitize_input_series() (in module biopsykit.utils.array_handling) sanitize_sliding_window_input() (in module biopsykit.utils.array_handling) save_log_data() (in module biopsykit.io.carwatch_logs) save_saliva() (in module biopsykit.io.biomarker) (in module biopsykit.io.saliva) save_sleep_endpoints() (in module biopsykit.io.sleep) Sazonov (class in biopsykit.sleep.sleep_wake_detection.algorithms.sazonov) scale_factor (biopsykit.sleep.sleep_wake_detection.algorithms.cole_kripke_old.ColeKripkeOld attribute) (biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic.ScrippsClinic attribute) (biopsykit.sleep.sleep_wake_detection.algorithms.webster.Webster attribute) scaling_factor (biopsykit.signals.ecg.event_extraction.QPeakExtractionForouzanfar2018 attribute) (biopsykit.signals.icg.event_extraction.BPointExtractionForouzanfar2018 attribute) sci() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) scoring (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter attribute) (biopsykit.classification.model_selection.SklearnPipelinePermuter attribute) ScrippsClinic (class in biopsykit.sleep.sleep_wake_detection.algorithms.scripps_clinic) scs() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) sds() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) se() (in module biopsykit.utils.functions) search_window_start_ms (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017SecondDerivative attribute) (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017ThirdDerivative attribute) select_dict_phases() (in module biopsykit.utils.data_processing) sig_brackets() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) SklearnPipelinePermuter (class in biopsykit.classification.model_selection) (class in biopsykit.classification.model_selection.sklearn_pipeline_permuter)

sleep_imu_plot() (in module biopsykit.sleep.plotting) sleep_wake_algo (biopsykit.sleep.sleep_wake_detection.sleep_wake_detection.SleepWakeDetection attribute) (biopsykit.sleep.sleep_wake_detection.SleepWakeDetection attribute) SleepEndpointDataFrame (in module biopsykit.utils.dtypes) SleepEndpointDict (in module biopsykit.utils.dtypes) SleepWakeDataFrame (in module biopsykit.utils.dtypes) SleepWakeDetection (class in biopsykit.sleep.sleep_wake_detection) (class in biopsykit.sleep.sleep_wake_detection.sleep_wake_detection) sliding_window() (in module biopsykit.utils.array_handling) sliding_window_view() (in module biopsykit.utils.array_handling) sliding_windows_imu() (in module biopsykit.signals.imu) (in module biopsykit.signals.imu.imu) slope() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) snake_to_camel() (in module biopsykit.utils.dataframe_handling) sop() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) split_array_equally() (in module biopsykit.utils.array_handling) split_data() (in module biopsykit.utils.data_processing) split_dict_into_subphases() (in module biopsykit.utils.data_processing) split_nights() (in module biopsykit.sleep.utils) split_subject_conditions() (in module biopsykit.utils.data_processing) split_train_test() (in module biopsykit.classification.utils) ssgs() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) sss() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) sssq() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) stack_groups_percent() (in module biopsykit.utils.dataframe_handling) stacked_barchart() (in module biopsykit.plotting) (in module biopsykit.plotting.plotting) stadi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) stai_short() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) standard_features() (in module biopsykit.saliva) (in module biopsykit.saliva.saliva) start_baseline_sec (biopsykit.protocols.cft.CftFeatureExtraction attribute) (biopsykit.protocols.CftFeatureExtraction attribute) start_factor (biopsykit.signals.ecg.segmentation.HeartbeatSegmentationNeurokit attribute) start_time_datetime (biopsykit.io.psg.PSGDataset property) start_time_unix (biopsykit.io.biopac.BiopacDataset property) (biopsykit.io.fibion.FibionDataset property) (biopsykit.io.psg.PSGDataset property) state_rumination() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) static_moment_duration() (in module biopsykit.signals.imu.feature_extraction.static_moments) stationarize_b_points() (biopsykit.signals.icg.outlier_correction.BaseBPointOutlierCorrection static method) stats_to_latex() (biopsykit.stats.stats.StatsPipeline method) (biopsykit.stats.StatsPipeline method) StatsPipeline (class in biopsykit.stats) (class in biopsykit.stats.stats) stepwise_backwards_linear_regression() (in module biopsykit.stats.regression) strip_df() (in module biopsykit.classification.utils) strip_labels() (in module biopsykit.classification.utils) structure (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) StudyDataDict (in module biopsykit.utils.dtypes) SubjectConditionDataFrame (in module biopsykit.utils.dtypes) SubjectConditionDict (in module biopsykit.utils.dtypes) SubjectDataDict (in module biopsykit.utils.dtypes) svf_120() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) svf_42() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) swb() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) swls() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

T

tb() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) test_times (biopsykit.protocols.base.BaseProtocol attribute) (biopsykit.protocols.BaseProtocol attribute) (biopsykit.protocols.car.CAR attribute) (biopsykit.protocols.cft.CFT attribute) TFMDataset (class in biopsykit.io.tfm) tics_l() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) tics_s() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) time_interval_ms (biopsykit.signals.ecg.event_extraction.QPeakExtractionVanLien2013 attribute) time_to_timedelta() (in module biopsykit.utils.time) timedelta_to_time() (in module biopsykit.utils.time) timezone (biopsykit.io.biopac.BiopacDataset property) (biopsykit.io.eeg.MuseDataset property) (biopsykit.io.fibion.FibionDataset property) (biopsykit.io.psg.PSGDataset property) (biopsykit.signals.imu.activity_counts.ActivityCounts attribute)

to_file() (biopsykit.protocols.base.BaseProtocol method) (biopsykit.protocols.BaseProtocol method) to_idx() (in module biopsykit.questionnaires.utils) to_pickle() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method) trait_rumination() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) tsgs() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) TSST (class in biopsykit.protocols) (class in biopsykit.protocols.tsst) type_d() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires)

U

update_permuter() (biopsykit.classification.model_selection.sklearn_pipeline_permuter.SklearnPipelinePermuter method) (biopsykit.classification.model_selection.SklearnPipelinePermuter method)

V

ValidationError ValueRangeError

var_norm_windows() (in module biopsykit.signals.imu) (in module biopsykit.signals.imu.imu) variable_length (biopsykit.signals.ecg.segmentation.HeartbeatSegmentationNeurokit attribute)

W

WearDetection (class in biopsykit.signals.imu.wear_detection) Webster (class in biopsykit.sleep.sleep_wake_detection.algorithms.webster) whr() (in module biopsykit.metadata) (in module biopsykit.metadata.metadata) wide_to_long() (in module biopsykit.questionnaires.utils) (in module biopsykit.utils.dataframe_handling) window_c_correction (biopsykit.signals.icg.event_extraction.CPointExtractionScipyFindPeaks attribute) window_size_ms (biopsykit.signals.icg.event_extraction.BPointExtractionArbol2017SecondDerivative attribute)

WITHINGS_RAW_DATA_SOURCES (in module biopsykit.io.sleep_analyzer) wpi() (in module biopsykit.questionnaires) (in module biopsykit.questionnaires.questionnaires) write_hr_phase_dict() (in module biopsykit.io.ecg) write_hr_phase_dict_csv() (in module biopsykit.io.ecg) write_pandas_dict_excel() (in module biopsykit.io) (in module biopsykit.io.io) write_result_dict() (in module biopsykit.io) (in module biopsykit.io.io)

Z

zero_pad_columns() (in module biopsykit.questionnaires.utils)